Butan-1-ol is less hydrophobic than octan-1-ol, so falls off the
hydrophobic reversed phase HPLC column more quickly?
The pKa of cocaine-H+ is 8.6.
Adjust syrup pH to 10. Add DCM. Cocaine becomes unionised and
proportionates into DCM.
Keep DCM layer, discard aqueous layer which contains
impurities. Add dilute H2SO4 at pH 1. Cocaine
ionises and proportionates into dilute acid layer.
Keep aqueous layer, discard DCM layer with more impurities.
Adjust to pH 10 with sodium hydroxide. Cocaine becomes unionised
again, and becomes much less soluble in water.
Concentrate the solution by rotary evaporation under vacuum
until the cocaine precipitates as a solid. Add HCl to the
precipitate to form cocaine hydrochloride solution. Concentrate and
crystallise solution.
α-amanitin is a small peptide. It may well be oxidised by
TLC, and could not be purified by GC. Some sort of liquid
chromatography is probably indicated, most likely ion exchange FPLC, or
similar.
DNA is negatively charged, so migrates towards the anode in an
agarose gel. All DNA molecules have the same charge density, because
this is largely due to the phosphate groups in the backbone, and this
increases linearly with length. Hence if electrophoresis separated
compounds purely based on their charge density DNA molecules would not
be separated. It is the pores in the gel, which provide more resistance
to larger molecules, that effect the separation.