1. Enzymes bind their substrates using ionic, covalent, polar interactions, etc. Polysaccharides could be bound to lysozyme by hydrogen bonding to e.g. aspartate or C=O groups in the peptide backbone.
  2. Prosthetic groups, coenzymes and metal ions.
    • ATP in hexokinase - soluble coenzyme provides energy/phosphate for glucose phosphorylation.
    • FeS Riske cluster in ferredoxin - prosthetic group carries electrons.
    • Coenzyme-A in citrate synthase - coenzyme transfers acetyl groups from pyruvate to oxaloacetate.
    • Haem in haemoglobin - prosthetic group carries oxygen.
    • NAD+ in alcohol dehydrogenase - coenzyme accepts electrons (H−) from alcohol when it is dehydrogenated.
    • Vanadium (III) in nitrogenase - metal ion donates electrons to nitrogen when it is hydrogenated to ammonia.
  3. Saturation kinetics means that as a reactant concentration increases, the order of reaction changes from 1st to 0th.
  4. Km is (approximately) the dissociation constant for the ES complex, and Vm is the overall ROR (k3[ES]) when all the enzyme is saturated, i.e. the maximum rate the enzyme can run at. Km is the substrate concentration that gives V= ½Vm.
  5. kcat = Vm ⁄ [E]T = 30 × 10−3 mol L−1 s−1/ (1 × 10−3 g L−1 ⁄ 20,000 g mol−1) = 600,000 s−1. Typical for carbonic anhydrase.
  6. Diisopropyl phosphofluoridate (DIPF) is a suicide inhibitor of acetylcholine esterase: it binds irreversibly to AChE, having been activated in the same way as the genuine substrate. It might be useful as a nerve gas or pesticide, depending on its specificity for human or insect AChE.
  7. Phosphate is a competitive inhibitor: no effect on Vm (Y-intercept same), but increased Km (X-intercept lower).
  8. PFK is regulated:
    • Because it is an important gatekeeper to glycolysis.
    • Because the reaction it catalyses is essentially irreversible.
    • By feedback allosteric inhibition by ATP and citrate.
    • By feedforward activation by AMP and ADP.
    • By working as a pair with fructose-1,6-bis-phosphatase, which catalyses a similar (but not identical) reverse reaction.
  9. Trypsin is secreted as a zymogen to prevent it digesting the cell in which it is synthesised.