Lipids And Membranes

Contents

Lipids

Lipids are in many ways the most diverse of the biological macromolecules, since they are something of a rag-tag bunch of leftovers. Lipids are pretty much everything in the cell that isn't very water soluble, and chemically they don't have a great deal in common with one another. The best known lipids are probably the fatty acids, so that is where we shall start.

The fatty acids are long chain carboxylic acids synthesised by the condensation and reduction of acetyl coenzyme-A units by fatty acid synthase. The more important ones have nonsystematic names in wide use. Lauric, myristic, palmitic and stearic acids are saturated (no multiple bonds), oleic and linoleic acids are monounsaturated (with 1 to 4 double bonds), and γ-linolenic and arachidonic acids are polyunsaturated. Note that all these acids (indeed, all common fatty acids) are cis (E) fatty acids. Because of the kinks in the chain caused by the double bonds, the unsaturated fatty acids tend to be liquids at room temperature (they are less easy to pack together to form a solid). Bacteria and plants (which cannot thermoregulate) will use more unsaturated acids in their cell membranes when they are exposed to cold: this helps to maintain membrane fluidity.

Molecular structure

Name

Lauric acid.

Lauric acid: saturated C12

Myristic acid.

Myristic acid: saturated C14

Palmitic acid.

Palmitic acid: saturated C16

Stearic acid.

Stearic acid: saturated C18

Oleic acid.

Oleic acid: monounsaturated C18

Linoleic acid.

Linoleic acid: diunsaturated C18

γ-Linolenic acid.

γ-Linolenic acid: triunsaturated C18

α-Linolenic acid.

α-Linolenic acid: triunsaturated C18

Arachidonic acid.

Arachidonic acid: tetraunsaturated C20

The nomenclature of these acids is rather complicated. There are at least five systems in use. Here are some of the above in the different systems. The delta system numbers the double bonds from the carboxyl group (the α carbon), whereas the omega system indicates where the first double bond is counting from the other end of the molecule (the ω carbon).

Trivial

Systematic

Colon

Delta

Omega

Stearic acid

Octadecanoic acid

18:0

Octadecanoic acid

-

Palmitic acid

Hexadecanoic acid

16:0

Hexadecanoic acid

-

Oleic acid

E-Octadec-9-enoic acid

18:1n9

cis9-octadecenoic acid

ω−9

Linoleic acid

9E, 12E-Octadeca-9, 12-dienoic acid

18:2n9

cis, cis9, 12-octadecadienoic acid

ω−6

γ-Linolenic acid

6E, 9E, 12E-Octadeca-6, 9, 12-trienoic acid

18:3n6

cis, cis, cis6,9,12- octadecatrienoic acid

ω−6

α-Linolenic acid

9E, 12E, 15E-Octadeca-9, 12, 15-trienoic acid

18:3n3

cis, cis, cis9,12,15- octadecatrienoic acid

ω−3

Modification of the polyunsaturated fatty acid arachidonic acid (5E, 8E, 11E, 14E-dodeca-5, 8, 11, 14-tetraenoic acid) form the prostaglandins, which are the inflammatory hormones that aspirin interferes with. The fatty acids may be combined with other compounds to form the lipids found in membranes, and as energy storage compounds. Triacylglycerols are the typical energy storage compound: they combine fatty acids with glycerol via and ester linkage. Diacyl and monoacyl compounds are also possible.

Esterification of fatty acid with glycerol forms acylglycerides.

However, the most important use for lipids in the cell is in the formation of membranes. Membranes contain amphipathic molecules, i.e. ones with a hydrophobic end and a hydrophilic end.

Some of these lipids contain two fatty acids esterified to a glycerol molecule. These are glycerolipids. The fatty acids esterified to the glycerol molecule form a hydrophobic "tail" to the molecule, whilst the third position is taken up by a polar head group containing phosphate and another compound. This other compound can be choline (as below) forming phosphatidyl choline, or serine (phosphatidyl serine), glycerol, inositol, ethanolamine, hydrogen (phosphatidic acid) or even an entire other diacylglycerol unit (forming a cardiolipin).

Phospholipids are composed of a phosphate-head group and two fatty acids connected to a glycerol backbone.

There are also several kinds of polar head groups. The following molecules show the various headgroups esterified to a simple distearyl glycerophosphate:

Molecular structure

Name of head group

Phosphatidic acid.

Proton - phosphatidic acid.

Phosphatidyl choline.

Choline - phosphatidyl choline.

Phosphatidyl ethanolamine.

Ethanolamine - phosphatidyl ethanolamine.

Phosphatidyl serine.

Serine - phosphatidyl serine

Phosphatidyl inositol.

Inositol - phosphatidyl inositol.

Phosphatidyl glycerol.

Glycerol - phosphatidyl glycerol.

Plain phosphatidic acid is negatively charged because of the phosphate group, which is ionised (-PO42−) at physiological pH. Phosphatidylserine is also negatively charged (it has a -PO4- group, and at physiological pH, the charges on its carboxylate and amine groups cancel). Phosphatidylcholine has no net charge, because the positive charge on choline cancels the negative on phosphate (-PO4-CH2CH2N+(CH 3)3), and phosphatidylethanolamine is neutral for similar reasons.

Cardiolipin is phosphatidylglycerol esterified to phosphatidic acid to form a sort-of double lipid. It is abundant in the mitochondrial inner membrane, where it acts to insulate the electric gradient across the membrane.

Glycerophospholipids are not merely structural: phosphatidylinositol phosphates  are involved in many aspects of cell-signalling[2]. PI(4,5)P2 (phosphatidylinositol-4,5-bis-phosphate) is a target of the enzyme phospholipase C (PLC), which breaks it down to diacylglycerol (DAG) and IP3 (inositol tris-phosphate) which are secondary messengers in cell-signalling cascades. Phosphatidylinositol-3-phosphate is also involved in marking membranes. PI(3)P is recognised by the retromer complex that carries M6P receptors back from the endosome to the Golgi.

Phospholipids have a polar head and nonpolar tail.

Phospholipids have a polar head and nonpolar tail.

Membrane phospholipids are amphipathic. The head group, containing e.g. charged phosphate and polar choline, is hydrophilic and water soluble.


The tail group, containing a nonpolar fatty acid chain, is hydrophobic (lipophilic) and water insoluble.

Unsaturated fatty acids form kinked tails in phospholipids.

In unsaturated fatty acids, these chains are kinked, and cannot pack so closely. This increases membrane fluidity.

Not all membrane lipids are formed from a backbone of glycerol however. Others use sphingosine instead, which is formed from serine and a fatty acid:

Sphingosine is the alternative backbone to glycerol in membrane lipids.

The sphingolipids are every bit as diverse as the glycerolipids. Sphingosine with a single acyl group attached via an amide linkage is called a ceramide. Ceramides can be further derivatised by the addition of groups to the terminal OH group. This head group may be any of those things that a glycerolipid can take: sphingomyelin is the sphingosine version of phosphatidyl choline, with a phosphate-choline residue connected to the terminal hydroxyl group by an ester bond.

Sphingosine is the alternative backbone to glycerol in membrane lipids.

The cerebrosides have a glucose or galactose unit connected to the terminal OH group by a glycosidic bond, and the gangliosides have an entire oligosaccharide connected here. This oligosaccharide contains at least one acid sugar derivative. These latter carbohydrate containing compounds are collectively called glycolipids, and one set of them is responsible for the ABO blood group system of erythrocyte membranes.

Sphingosine is a long-chain fatty alcohol and amine.
Sphingosine

Ceramides are sphingosine-fatty acid amides.
Ceramide = sphingosine + fatty acid

Sphingomyelin is the sphingosine analogue of phosphatidyl choline.
Sphingomyelin = ceramide + choline

Glycolipids are ceramides with sugar head groups.
Glycolipid = ceramide + sugar

Sphingolipids form lipid rafts which are involved in cell signalling

Lipid rafts are thicker because they are rich in cholesterol and sphingolipids. They accumulate molecules involved in signalling, such as transmembrane proteins, lipid-tethered proteins and glycolipids.

Sphingomyelin is the sphingosine analogue of phosphatidylcholine. It is a very common component of eukaryote plasmalemma. Like all lipids, it is synthesised in the SER.

Sphingolipids are mostly found on the outer leaflet.

There is a very asymmetric distribution of lipids between the inner (cytosolic) and outer leaflets. Sphingolipids are mostly found on the outer leaflet.

Source

Erythrocyte

Myelin

Mitochondrion

Phosphatidyl ethanolamine

18

15

17

Phosphatidyl serine

7

9

5

Phosphatidyl choline

17

10

40

Sphingomyelin

18

8

5

Glycolipids

3

28

0

Cholesterol

23

22

6

Others

13

8

27

Fatty acids are not always covalently modified: waxes are simple mixtures of long chain fatty acids with long chain alcohols, and serve a waterproofing and protective function e.g. in the plant cuticle.

Smooth endoplasmic reticulum

The SER is formed of tubular cisternae, and is the main site of lipid synthesis in eukaryotic cells. Both the smooth and rough endoplasmic reticula are held together by the cytoskeleton, and their entire lumenal contents are contiguous with each other. The endoplasmic reticula comprise about half the mass of membranes in a typical eukaryotic cell.

The main role of the SER is the synthesis of lipids; although calcium storage (in the sarcoplasmic reticulum, a specialised ER found in muscle cells) is also important.

The synthesis of conventional phosphatidyl phospholipids occurs on the cytosolic leaflet of the SER. The synthetic enzymes responsible are membrane-bound. Acyl transferase adds two fatty acyl CoA molecules to glycerol-3-phosphate to form: phosphatidic acid. A phosphatase then removes the phosphate group to form diacylglycerol (DAG). The head group is then added to DAG from e.g. CDP-choline in the case of phosphatidylcholine.

Phospholipids are synthesised by membrane bound enzymes in the SER

There is much faster diffusion from one leaflet of a naturally occurring to the other leaflet than is observed in artificial membranes composed only of phospholipids. An enzyme called scramblase is responsible for this flip-flopping of lipids from one leaflet to the other. (The diagram is diagrammatic: scramblase allows lipids to equilibrate across the leaflets, not necessarily swapping lipids in a 1 for 1 fashion).

Scramblase allows rapid transverse diffusion of lipids from one leaflet of a membrane to the other

However, the cell membrane is still highly asymmetric. How can this be? The cell membrane also contains flippase, which specifically flips phosphatidylserine and phosphatidylethanolamine from lumenal to cytosolic leaflet. Hence, the inner leaflet of the plasma membrane has more of these lipids than phosphatidylcholine, which appears mostly on the outside.

Flippase discriminates between these lipids bases on the fact that phosphatidylcholine has a trimethylammonium head group, whilst phosphatidylserine and phosphatidylethanolamine have a free amine head group.

The other main sort of eukaryotic lipid, sphingolipids, are synthesised exclusively on the lumenal face of the SER. Many of these lipids are glycosylated, and are therefore antigenic (the ABO blood grouping rely partly on glycolipids of this sort).

Structures and functions of membranes

Membranes are important in many aspects of cellular structure and function. Early studies showed that membranes formed the boundary between the cell and the environment. Erythrocyte ghosts (empty red blood cells) are good examples of cellular (plasma) membranes, and are used as a model. From these studies, it has become clear that membranes are much more complex than mere boundaries between the cytoplasm an extracellular environment.

There are three main functions of membranes:

  1. Compartmentation of organelles and enzymes.
  2. Regulation of transport.
  3. Detection and transmission of signals within and between cells.

The cell membrane has long been known to exchange of material with its environment. This is well illustrated in the processes of exocytosis and endocytosis, where solids are expelled from or taken into cells.

Endocytosis is the engulfment of extracellular materials by eukaryotic cells.
Endocytosis occurs when a eukaryotic cell ingests an extracellular body.

In 1894, Overton observed that lipophilic (hydrophobic) molecules could enter root hairs, but hydrophilic molecules could not. He concluded that the cells were coated with two lipids: lecithin (a phospholipid, also called phosphatidyl choline) and cholesterol, which accounted for the observed permeability. Modern research shows that phospholipids and cholesterol do make up a large proportion of membrane structure, but that there are also many other components.

Models of membranes

Many models have been proposed for biological membranes. This is an (approximate) timeline of these ideas.

Langmuir's monolayers (1920)

Langmuir showed that if phospholipids are dissolved in benzene they could be dispersed as a monolayer on the surface of water in a Langmuir trough.

A monolayer consists of a thin layer of amphipathic molecules arranged with their polar groups dissolved in water, and their nonpolar group dissolved in each other.

Micelles are globules of amphipathic molecules with their head groups presented to the aqueous solvent.

Micelles

If shaken with water, phospholipids (like detergents) will form micelles. These are colloids in an aqueous suspension. Micelles have a hydrophilic outside and hydrophobic inside.

The so-called hydrophobic force is really an effect of entropy and the smaller order associated with larger globules of fat in water.

Water is inherently disordered, but when lipids are present, the water molecules have to arrange themselves in a more ordered way. The less order there is in a arrangement, the more likely (∆G = ∆H + T∆S) the arrangement is to happen. The clumping together of fat molecules reduces the amount of water that has to be ordered. The upper (clumpy) picture has fewer water molecules arranged neatly than the lower (less clumpy) pair of pictures.

Gortner & Grendel's bilayers (1925)

These researchers extracted the lipid from the plasma membrane of RBCs and applied them to a Langmuir trough. They covered twice the area of the original membrane showing that natural membranes are bilayers.

A bilayer consists of two layers of fat, with the polar heads presented to the surrounding solvent.

Vesicles or liposomes are the bilayer equivalent of a micelle. A cell is effectively a gigantic vesicle.

Liposomes

If lipids are sonicated at 20 kHz they form vesicles (liposomes) with an internal space. These can be used to deliver hydrophobic drugs to cells, and as model cells.

Black lipid membranes are artificial bilayers made by dissolving lipid in benzene and rapidly forcing a thin layer into water.

Black lipid membranes (1930)

Produced by forcing a membrane with a small hole in it through a monolayer in a Langmuir trough. Natural and black lipid membranes have similar thicknesses (c. 7 nm), but natural membranes are generally far more conductive. This indicates there's something else in natural membranes besides lipid.

The composition of membranes reflects their specialisations: nerve cell membranes contain non-conductive lipid, mitochondria contain significant amounts of protein (respiratory complexes).

Source

Protein

(%w/w)

Lipid

(%w/w)

Carbohydrate

(%w/w)

Myelin nerve sheath

18

79

3

Erythrocyte

49

43

8

Chloroplast

70

30

0

Mitochondrion (inner)

76

24

0

Davison & Danielli's sandwich (1935)

The earliest true model of membranes proposed a phospholipid bilayer covered in a globular protein coat.

The Davison-Danielli model pictured membranes as bilayers of lipid sandwiched between two layers of protein.

Robertson's unit membrane

Under the electron micrograph, this model appears acceptable: 7 nm thick, with lipid in the middle (white) and protein on outside (black).

But freeze-fracture scanning electron micrographs showed things inconsistent with the unit membrane, such as pores and pits.

This micrograph was prepared by freezing a cell, then fracturing it with a sharp blow. The forces holding the leaflets of a membrane together are quite weak, so freeze fracture often pulls the two leaflets apart, allowing you to see the proteins that span the membrane very clearly.

Singer-Nicholson fluid mosaic (1972)

The fluid mosaic model pictures the membrane as a phospholipid bilayer with many proteins, some integral to the membrane, others attached more loosely. Note the many other components, such as cholesterol; and the attachement sites for the extracellular environment (via glycoproteins) and intracellular cytoskeleton.

The Singer-Nicholson model pictures the membrane as a fluid mosaic of many lipid types, integral and peripheral proteins, other components within the membrane, and many components interacting with the extracellular environment or cytosol.

Membrane construction

Many proteins participate in the structure and function of membranes. They may be broadly classified as those that are tightly bound (integral) and those that are loosely bound (peripheral).

Peripheral membrane proteins are not tightly bound to the membrane.

Peripheral membrane proteins attach via non-covalent interaction with other membrane proteins. They can be removed easily with gentle persuasion (e.g. high ionic strength buffers).

Integral membrane proteins pass through the membrane and are firmly anchored by hydrophobic interactions.

In integral membrane proteins hydrophobic amino acids form an α-helix (with the hydrophobic residues pointing outward into the inside of the membrane), which spans the membrane. Carbohydrates coat the hydrophilic extracellular portions, and such proteins are termed glycoproteins. They are difficult to remove from membranes with gentle procedures.

Pore proteins also pass through the membrane, but provide a hydrophilic channel through which water and other polar species can pass.

Pore proteins are integral proteins in which hydrophobic amino acids line the outside of the pore, binding the pore into the membrane, whilst hydrophilic amino acids line the inside of the pore, providing a channel that is friendly to water-soluble chemicals.

Lateral diffusion of phospholipids is faster than transverse flip-flop.

Fatty acids and proteins are able to diffuse in the membrane, either laterally (parallel to the membrane), or transversely (flip-flopping from one leaflet of the membrane to the other). Lateral diffusion of phospholipids is far faster than transverse 'flip-flop'. Proteins can also migrate laterally. If we fuse a mouse and a human cell, the membrane proteins are thoroughly mixed within 1 hour.

Proteins also migrate laterally in the membrane.

Membrane fluidity is affected by several factors. Membranes are more fluid when warm, because the lipid molecules have more kinetic energy. They are also more fluid when full of kinky unsaturated fatty acids, which prevent the lipids from packing closely together.

Heating increases membrane fluidity by reducing the closeness of phospholipid packing.

Unsaturation of the fatty acyl chains increases membrane fluidity by reducing the closeness of phospholipid packing.

Nerve transmission relies on ion pumping: when membranes are very fluid, this interferes with ion channels (transmembrane proteins), and prevents rapid passage of ions. This is how local anaesthetics such as lignocaine work.

Lignocaine is an anaesthetic that works by altering nerve cell membrane fluidity.

Eukaryote membranes

The Eukarya have highly compartmentalised cells, and almost certainly represent the products of symbioses between bacteria-like cells some 3 500 000 years ago. The Eukarya have an anaerobic Archaea-like substratum (the Archaea or Archaebacteria are a group of 'bacteria', many of which live e.g. in boiling water, at pH 1, under conditions of extreme salinity, etc), as evidenced by their protein-bound DNA and multiple RNA polymerase types. Chloroplasts are closely related to the cyanobacteria (blue-green algae), particularly Prochloron. Mitochondria are closely related to the proteobacteria (which includes Escherichia coli), possibly descendents of a bacterium with a similar life-style to the intracellular parasite Bdellovibrio. The is some small evidence that the cytoskeleton may also be an endosymbiont, but the evidence is far less convincing.

The eukaryotic endomembrane system consists of several distinct structures:

There is great variation in protein and lipid content of different eukaryotic membranes. Some of this variation is genetically controlled, some is influenced by the environment. Plants acclimatised to cold conditions (hardened-off) become more resistant to cold. This is due to unsaturated membrane lipids accumulating and allowing fluidity at low temperatures, which is controlled by the van der Waals forces between the lipids.

Unsaturated membrane lipids do not pack closely, have weaker van der Waals forces between them and therefore have lower melting points.

Van der Waals forces are caused by attraction between dipoles (i.e.  molecules with positive and negative 'ends'). They are stronger if molecules are big, can be closely packed and are unbranched. There are three sorts (although A-level chemistry syllabuses often erroneously equate van der Waals forces with London dispersion forces only).

Van der Waals forces occur between polar and transiently polar molecules.

Bacteria use unsaturated lipids to make their membranes more fluid, but they also make extensive use of shorter lipids, which have lower melting points, for the same purpose.

Short membrane lipids have weaker attractive forces between them, so have a lower melting point than longer lipids.

The myelin sheath of a nerve cell contains only 18% protein. The 82% of lipid provides good electrical insulation. The inner membrane of a mitochondrion contains 76% protein. This high content of protein complexes is required for oxidative phosphorylation and to delimit a proton-gradient.

Cholesterol
Cholesterol.

In addition to the glycerolipids and sphingolipids already discussed, eukaryotes make wide use of terpenes, escpeially sterols and steroids. These hydrophobic compounds are derived from isoprene, and belong to the group of chemicals termed 'terpenes'. Terpenes are polymers of the five-carbon compound isoprene (a.k.a. terpenoids, isoprenoids, prenyl compounds). Prenylation is the addition of a terpene to protein: e.g. Rab, which is anchored to the membrane by a farnesyl (3 isoprenes) or geranylgeranyl (4 isoprenes) group. Cholesterol is a common sterol component of eukaryotic cell membranes (but is absent from almost all bacteria). It is the precursor for many hormones too.

Cholesterol has conflicting effects on membrane fluidity: the steroid rings help stiffen the membrane, making it less fluid (remember that clathrin is needed to bend the plasmalemma during endocytosis?), but they also prevent the other lipids from packing tightly, so prevent membranes from freeing (cholesterol 'abolishes phase transitions').

Cholesterol makes membranes less fluid, but also prevents phase transitions.

Cholesterol is made by epoxidation of squalene ('shark oil'), which requires molecular oxygen. This means the evolution of cholesterol must post-date photosynthesis (which is probably why only eukaryotes have it).

Cholesterol biosynthesis involves the epoxidation of squalene by molecular oxygen.

Eukaryotes often have glycolipids in the outer leaflet of their plasmalemma. These come in several forms: cerebrosides are ceramides with a single sugar head group. Gangliosides have acidic oligosaccharide head groups and are involved insulation in neurone membranes. Some glycolipids are antigenic, e.g. ABO antigen system.

The ABO blood groups are determined by sugar residues attached to membrane lipids and proteins.

The endomembranes are continuous and delimit two topological spaces.

Because of vesicular transport, the inside of the ER, Golgi, etc., and the outside of the cell are topologically continuous (the white areas), and distinct from the cytoplasmic space (dark areas). Proteins destined for the outer space have to be synthesised on the RER and threaded through the ER membrane.

Cells need to communicate with each other, and with the extracellular matrix (ECM). This is mostly achieved by interactions between proteins in the membranes of cells. These are synthesised on the RER and glycosylated in the Golgi body.

Integrins reversibly bind the cytoskeleton to the ECM.

Reversible phosphorylation of integrins (the trapezium-shaped things) regulates attachment through the membrane between fibronectin and actin.

Bacterial membranes

The Bacteria are simpler in construction than the Eukarya. Bacteria have very few internal membranes, and no double-membrane bound organelles. Their lipid and protein components are different to those of the Eukarya.

The infamous Gram stain depends on the fact that Gram negative and Gram positive bacteria have very different cell architectures. Gram positive bacteria have much thicker cell walls, whereas Gram negatives have thin cell walls and an extra periplasmic membranes exterior to their plasmalemma.

Gram negative bacteria have a periplasmic membrane.

Antibiotics are pumped through the membrane via a pump that fuses the plasmalemma and periplasmic membrane.

The periplasmic membrane contains periplasmic pumps. Multiple drug resistance in bacteria (e.g. MRSA, methicillin-resistant Staphylococcus aureus) is achieved by multi-drug pumps.

DNA databases are often poor for environmental bacteria, and quick biochemical tests for bacteria (like the API kits) are biased to clinical isolates. Fatty acid methyl ester analysis (FAME) provides a lipid fingerprint for bacteria and is therefore useful for identifying some bacteria.

Archaeal membranes

Archaea (Archaebacteria) are bacteria on the surface, but eukaryotes under the hood. Many are extremophiles, living in conditions of extreme heat (100°C), acidity (pH 1.5) or salinity (1.5 M). How do their membranes cope?

Archaeal membrane lipids are very odd. They are joined by ether linkages (-O-), not ester linkages (-COO-). The 'fatty acids' are terpenoids (polyisoprenes), not real fatty acids, and they are generally diglycerides with no head groups. The glycerol in the backbone is also of the opposite chiral configuration to that in bacteria and eukaryotes.

Archaeal membrane lipids contain isoprene-based tails and ether linkages.

Methanopyrus lives in black smokers (which are very hot). The ester bonds in conventional lipids would be hydrolysed, yielding free fatty acids, phosphate, choline and glycerol. The ether bonds of Methanopyrus resist hydrolysis and it has no head group to lose!

Unsaturated terpene lipid from Methanopyrus

Halobacterium lives in 1.5 M NaCl. The terpenoids chains make membrane less fluid. This helps regulate salt uptake by making the membrane extremely impermeable.

Terpene lipid with glycerol head group from Halobacterium
Note that this lipid has a head-group: Halobacterium can cope with this because it is not a hyperthermophile.

Thermoplasma has no cell wall and lives at pH 2, 100°C. Its lipids are crosslinked across the membrane, to form a stiff, gel-like monolayer.

Some archaeal membrane lipids span the membrane entirely.

Ether linkages are less prone to hydrolysis, and membrane-spanning phytanyl groups make the membrane very rigid and impermeable. This stops salt getting in, and stops the membrane becoming too fluid at high temperatures. This means that for many Archaea, the membrane is not a fluid mosaic, but a more solid gel mosaic.

And some archaeal membrane lipids span the membrane entirely and contain cyclopentane rings.

Bacteriorhodopsin is a trimeric light-dependent proton pump with a central channel, which some Archaea use to generate a proton gradient for ATP synthesis. It was one of the earliest photosynthetic apparatuses to evolve. It is well understood because it is not denatured when removed carefully from the membrane, and is therefore easy to purify for X-ray crystallography.

Bacteriorhodopsin is a trimeric protein.
Bacteriorhodopsin trimer.

Bacteriorhodopsin monomers each span the membrane seven times.
Bacteriorhodopsin cartoon.

Transport and diffusion

Membranes are (approximately) thin layers of grease, so their cores are very hydrophobic. So, how do water-soluble things get through?

Chemicals can cross in three main ways.

The latter two types are mediated movements: they require a protein to help.

Much of the research on membrane conduction is done using patch clamping. Patch clamps are thin glass needles, which can be used to suck off a piece of membrane for study. Differences in the buffer outside the needle, and that contained within the needle can be used to study the electrical properties of the membrane, or the kinetics of transport of particular chemical species. You can also puncture the cell and manipulate the whole cell by e.g. injecting ions or ATP.

Simple unmediated diffusion is limited to low molecular weight (<150 Da), uncharged species, going down their concentration gradient, such as gases and small organic chemicals.

Simple diffusion of small uncharged molecules across a membrane.

Diffusion is passive and occurs only down a concentration gradient. The rate of diffusion depends on:

Fick's law relates the speed of diffusion to membrane parameters:

dN ⁄ dt = − P A ∆C ⁄ x

Solubility vs. diffusion graph:

Water diffuses much more readily than its oil-solubility would indicate.

Water does not fit nicely on this line. Although it is quite insoluble in oil, it diffuses much more readily across a membrane than expected. What is going on?

Facilitated diffusion

Water's diffusion across the membrane is facilitated by aquaporin pore proteins, which form hydrophilic channels through the membrane. These are size-selective for water (one of the smallest molecules that cells deal with), so other metabolites, like alcohol, do not pass through.

Aquaporin channels are size-selective for water.

Facilitated diffusion differs from simple diffusion:

Charged molecules diffuse at a negligibly small rate, and do not obey Fick's law, because they respond to electrical gradients as well as to gradients of concentration. An electrical potential exists across most plasma membranes, the potential usually being negative on the inside. e.g. negatively charged phosphatidylserine is commoner on the cytosolic leaflet. This potential is smaller in animal cells −50 mV, than in most plant cells −200 mV. Ions diffuse down their electrochemical gradient, usually through pores called ion channels.

Ion channels can be highly selective for the chemical species they let through. Sodium's diffusion across the membrane is facilitated by an ion channel. It is selective for Na+ by the size of the pore in the channel and the charges on amino acids inside the pore. K+ is too big to pass through; Cl is too negative. Li+ slips through though, as it is even smaller than sodium. Lithium is used as a treatment for manic depression, which is caused by sodium/potassium channel problems.

Ion channels are both size and charge selective.

Like an enzyme, protein-mediated transport (whether active or passive) shows saturation kinetics. This diagram shows the saturation kinetics displayed by the erythrocytic GluT1 glucose transporter.

Transport proteins show saturation kinetics, just like enzymes.

Channels may also be ligand- or electrically- gated. The acetylcholine receptor is a gated sodium/potassium channel in synaptic membranes. The change in membrane potential caused by the potassium/sodium concentrations propagates to the sarcoplasmic reticulum, where it opens voltage-gated calcium channels, which release calcium ions into the cytoplasm, causing muscle contraction.

Nerve transmission relies on both ligand (neurotransmitter) and voltage gating.

Gating is extremely important. Muscle contraction is regulated by calcium fluxes through voltage gated channels. The opening of plant stomata is regulated by ligand (abscisin) gated channels. Channels can mediate very rapid ion movements and these can act as signals transferring information from cell to cell. This is important in nerve impulse transfer.

Pores are 'passive': they are basically holes that allow chemical species to travel through them. Gating merely (un)blocks the hole. Carrier proteins, on the other hand, change their conformation significantly when transporting species.

Hydrophilic glucose is transported by a carrier protein across the hydrophobic membrane.

Ionophores are small carrier molecules (not usually proteins). Valinomycin is a cyclic peptide. It acts as an antibiotic ionophore that carries 105 potassium ions per second across membranes.

Valinomycin is a cyclic peptide that transports potassium across membranes.

Gramicidin is a short dimeric peptide. It acts as an antibiotic ionophore that carries 107 potassium and sodium ions per second across membranes.

Gramicidin is a dimeric peptide that forms a potassium-transporting channel through the membrane.

Active transport

The concentration of metabolites across e.g. an erythrocyte membrane is not in thermodynamic equilibrium. The cell expends energy (ATP) maintaining these gradients.

Ion

Cell (mM)

Blood (mM)

K+

139

4

Na+

12

145

Cl

4

116

Ca2+

0.0002

1.8

Active transport differs from facilitated diffusion:

The proteins involved in transport can be classified according to the following 'porter protein' scheme:

Porter proteins are classified based on how they transport species across membranes.

Uniport. Transports one species. Also known as a pump.

Symport. Transports two species in the same direction, often one against its gradient, one with it.

Antiport. Transports two species in opposite directions, often one against its gradient, one with it.

The calcium ATPase uniport (pump) is associated with the membrane of the sarcoplasmic reticulum. It regulates the levels of calcium in the muscle cells. High levels of calcium in the cytoplasm cause contraction and low levels cause relaxation.

The calcium ATPase uses the power of ATP to transport two calcium ions against their concentration gradient.

The sodium/potassium (Na+/K+) ATPase exports 3 Na+ and imports 2 K+ through the plasmalemma per ATP. Both ions are moved against their electro-chemical gradients. This pump is the main source of the membrane potential in animal cells. It is usually classed as an antiport, although it might be better considered as a multifunction pump, because it is relying on primary active transport, rather than secondary: note that both species are transported against their electrochemical gradients.

The sodium-potassium ATPase transports three sodium and two potassium ions against their concentration gradients using ATP.

The three types of ATPase have different structures and functions.

There are three classes of ATPases.

The glucose/Na+ symport uses the energy stored in the Na+ gradient (produced by the Na+/K+ ATPase) to transport glucose against its concentration gradient.

The symport uses the gradient of sodium set up by the Na-K ATPase to import glucose into the cell against its concentration gradient.

The pumping of protons across a membrane by an energy-expending uniport generates a proton motive force, which can be exploited by an ATPase running 'in reverse' to generate ATP. This is how bacteriorhodopsin, oxidative phosphorylation and photosynthesis all work:

A pump uses energy to expel protons, which flow back into the cell via ATPase, producing ATP.

Test yourself

  1. Compare and contrast sphingomyelin and phosphatidyl choline.
  2. What features of phospholipids and proteins allow them to form membranes?
  3. Why is the fluid mosaic the preferred model for membranes?
  4. What are the major biochemical differences between the membrane lipids of the three domains?
  5. What is it that oily fish, plants and other sources of 'healthy' unsaturated fat have in common?
  6. Why does the erythrocyte cell membrane stimulate an immune response?
  7. Complete the table below.
  8. Transporter

    Uni-, sym- or antiport?

    Carrier or channel; any gating?

    Form of energy required?

    Glucose/Na+ pump

     

     

     

    AChE receptor

     

     

     

    Fo/F1 proton ATPase

     

     

     

    Na+/K+ ATPase

     

     

     

Answers

Bibliography

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